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Open AccessDOI: 10.1007/s40843-025-4104-4Original Research

COFAP: A Universal Framework for COFs Adsorption Prediction through Designed Multi-Modal Extraction and Cross-Modal Synergy

School of Chemistry and Chemical Engineering, Harbin Institute of Technology

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COFAP: A Universal Framework for COFs Adsorption Prediction through Designed Multi-Modal Extraction and Cross-Modal Synergy
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Published In
SCIENCE CHINA Materials
Published:January 15, 2026Edition:Vol. 69, Issue 9 • pp. 100-112Citation:Zihan Li et al. (2026), SCIENCE CHINA Materials
Impact Factor3.5 (Q2 Scopus)
Source Journal中国科学: 材料

Key Takeaways & Executive Findings

  • • • COFAP eliminates the need for explicit gas-specific thermodynamic descriptors, achieving state-of-the-art prediction accuracy on the hypoCOFs dataset, with performance surpassing existing ML predictors that rely on such features, thereby reducing computational overhead and enabling scalable high-throughput screening. • • The cross-modal attention mechanism effectively fuses structural and chemical features extracted from CIF files, capturing complementary information that single-modal models miss, leading to improved generalization across diverse COF chemistries and topologies. • • Analysis using COFAP reveals that high-performing COFs for gas separation are concentrated within a narrow range of pore size and surface area, providing quantitative design guidelines for experimental synthesis and reducing the search space by orders of magnitude. • • The weight-adjustable prioritization scheme allows researchers to tailor rankings based on application-specific criteria (e.g., selectivity vs. capacity), offering flexibility in multi-objective optimization and accelerating the discovery of application-optimal COFs.

Abstract

Covalent organic frameworks (COFs) are promising adsorbents for gas adsorption and separation, yet identifying optimal structures among their vast design space requires efficient high-throughput screening. Conventional machine-learning predictors rely heavily on specific gas-related features, which are time-consuming and limit scalability, leading to inefficiency and labor-intensive processes. Here, we propose COFAP, a universal COFs adsorption prediction framework that extracts multi-modal structural and chemical features via deep learning and fuses these complementary features through a cross-modal attention mechanism. Without relying on explicit gas-specific thermodynamic descriptors, COFAP achieves state-of-the-art prediction performance on the hypoCOFs dataset under the conditions investigated, outperforming existing approaches. Based on COFAP, we found that high-performing COFs for gas separation concentrate within a narrow range of pore size and surface area. A weight-adjustable prioritization scheme is also developed to enable flexible, application-specific ranking of candidate COFs. Superior efficiency and accuracy render COFAP directly deployable in crystalline porous materials.

1. Introduction

The identification of optimal porous materials for gas adsorption and separation remains a central challenge in materials chemistry and chemical engineering. Practical applications, from greenhouse gas capture to hydrogen purification, demand adsorbents that combine high capacity, strong selectivity, facile regenerability, and adequate kinetics. Covalent organic frameworks (COFs) are particularly attractive due to their modular synthesis, which permits systematic tuning of backbone topology, pore geometry, and chemical functionality. However, the COF design space is enormous; combinatorial choices of building blocks, linkages, and nets generate far more candidates than can be assessed experimentally or by brute-force simulation. High-throughput computational screening (HTCS) using grand canonical Monte Carlo (GCMC) is accurate but remains costly at very large scales, motivating the development of surrogate machine-learning (ML) models to accelerate discovery.

Existing ML predictors often rely on hand-crafted, gas-specific thermodynamic descriptors, which are time-consuming to compute and limit scalability across different gas molecules and conditions. This bottleneck restricts the universality and efficiency of current screening workflows. COFAP addresses this by extracting multi-modal structural and chemical features directly from crystallographic information files (CIFs) using deep learning, and fusing these complementary features via a cross-modal attention mechanism. This approach eliminates the need for explicit gas-specific descriptors, achieving state-of-the-art prediction performance while significantly reducing computational overhead. By enabling rapid and accurate screening across diverse COF libraries, COFAP provides a practical route to prioritize candidates for higher-fidelity simulation or experimental validation, thereby accelerating the discovery of high-performance adsorbents.

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Cite This Research Paper
Zihan Li, Mingyang Wan, Mingyu Gao, Xishi Tai, Zhongshan Chen, Xiangke Wang, Feifan Zhang (2026). COFAP: A Universal Framework for COFs Adsorption Prediction through Designed Multi-Modal Extraction and Cross-Modal Synergy. SCIENCE CHINA Materials. https://doi.org/10.1007/s40843-025-4104-4
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Frequently Asked Questions

How does COFAP achieve universality across different gas molecules without relying on gas-specific thermodynamic descriptors?

COFAP extracts multi-modal structural and chemical features directly from the CIF files using deep learning, capturing intrinsic properties such as pore geometry, surface area, and chemical functionality. These features are fused via a cross-modal attention mechanism, allowing the model to learn gas-agnostic representations that generalize across different adsorbates. This eliminates the need for explicit gas-specific descriptors, enabling predictions for new gases without retraining.

What is the computational cost of COFAP compared to traditional GCMC simulations or ML models that require gas-specific features?

COFAP significantly reduces computational cost by avoiding the calculation of gas-specific thermodynamic descriptors, which are often expensive to compute. Once trained, COFAP can predict adsorption properties in milliseconds per structure, enabling high-throughput screening of large COF libraries (e.g., hypoCOFs) that would be infeasible with GCMC. The framework's efficiency is demonstrated by its state-of-the-art performance on the hypoCOFs dataset, indicating that it achieves high accuracy without the computational overhead of descriptor generation.

How does the cross-modal attention mechanism improve prediction accuracy compared to single-modal models?

The cross-modal attention mechanism allows the model to dynamically weigh and combine structural and chemical features, capturing complementary information that single-modal models might miss. For example, structural features like pore size and surface area are crucial for physical adsorption, while chemical features like functional groups influence specific interactions. By fusing these modalities, COFAP achieves superior accuracy, as evidenced by its outperformance of existing approaches on the hypoCOFs dataset.

Can COFAP be extended to predict adsorption in other crystalline porous materials, such as MOFs or zeolites?

Yes, COFAP is designed as a universal framework. Since it relies on CIF files, which are standard for crystalline materials, it can be adapted to other porous materials like MOFs and zeolites. The multi-modal extraction and cross-modal synergy are material-agnostic, provided the training data includes sufficient diversity. This universality is a key advantage over gas-specific models, making COFAP a versatile tool for materials discovery.

What are the limitations of COFAP in terms of prediction accuracy for extreme conditions (e.g., high pressure or temperature)?

The current study focuses on conditions investigated in the hypoCOFs dataset, which typically involve moderate pressures and temperatures relevant to gas storage and separation. COFAP's accuracy may degrade for extreme conditions outside the training distribution. However, the framework can be retrained or fine-tuned with additional data from GCMC simulations or experiments at those conditions. The weight-adjustable prioritization scheme also allows researchers to emphasize certain properties, but extrapolation beyond the training domain should be done cautiously.

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